No, locked are saved. If you use FCOItemSaver addon to lock items it can be setup to be allowed to deconstruct, or not depending on the lock icon.
There is also another addon to deconstruct. Search for deconstruct.
I don't remember the name.
DoItAll got as benefit the possibilities to mail all, junk all, sell all, bank all, launder/fence all and trade all items.
It's working together with AdvancedFilters (beta) addon so only the shown items will be deconstructed/mailed etc.
Another helper at the crafting stations is FCOCraftFilter. You can ahow/hide items in your bank. Good to save them against deconstruction.
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