If you right click on the games on the list in Minion you don't have a remove option?
Can you post your minion.xml? Its located in the windows user directory C:\Users\<your windows username>\.minion\ That is the config file that remembers your game list and AddOns and doesn't get deleted when you uninstall.
The addon backup is located at C:\Users\<your windows username>\.minion\backup\
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