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I'd copy over my addons from anoter backup folder and then use Minion to update them.
But yoo also need to check the dependencies the addons used/use now and install them via Minion to your live/AddOns folder directly so that Minion is able to find and update them in the future.
Remove and libs/ subfolder from your addons in order to let the addons use the live/AddOns/Lib... folders properly. Else they will load the embedded older library versions and most likely fail to work, or throw errors.
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